Omics-OSDocs

Tutorials

Step-by-step analysis tutorials with Lobster AI

Guided workflows from raw data to biological insight.

Single-Cell RNA-seq

QC, clustering, marker genes, and cell type annotation

Bulk RNA-seq

Differential expression with pyDESeq2

Proteomics

Mass spectrometry processing and statistical analysis

Custom Agent

Build and register your own agent package

Claude Code Integration

Use Lobster as a coding agent skill

Semantic Search & Ontology Matching

Match biomedical terms to standardized ontology concepts using vector embeddings

Bulk RNA-seq Analysis Tutorial

This comprehensive tutorial demonstrates how to perform bulk RNA-seq differential expression analysis using Lobster AI with pyDESeq2 integration, formula-bas...